A urethral discharge is collected on a cotton swab. A sample from this swab is applied in a very thin layer to a microscope slide. A series of stains called a Gram stain is applied to the specimen. It is first stained with crystal violet stain, then iodine, then decolorized, then stained with safranin. The stained smear is then examined under the microscope for the presence of bacteria. The color, size, and morphologic appearance (shape) of the cells help identify the infecting organism.
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